Posts Tagged ‘pavilion lake’

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Wednesday, July 15th, 2009

Tracking submarines on the go!

by Matthew Deans

For the past 10 days we have been making real time maps of all of the sub operations at Pavilion Lake. To do this, we have written some software to generate KML files to load into Google Earth. The Intelligent Robotics Group at NASA Ames has a lot of experience with ground data systems for NASA missions like the MER rovers, robotic earth analog field tests like the Robotic Recon test in northern Arizona in June, disaster response applications, and the Gigapan camera system, we were able to put together a set of tools to support sub tracking and mapping using a lot of existing software. We call the collection of tools and processes the “Surface Data System.”

Pavilion Lake 2009 Data Map

Pavilion Lake 2009 Data Map

We started with importing overlays of the bedrock geology from British Columbia Geological Survey (BCGS), as well as sonar bathymetry and sonar backscatter maps that show depth of the lake and structure of the bottom. These provide context for flight planning and for setting expectations for what we will find during the flights. In real time during the submarine flights, we get sub position every 5 seconds from the navigation computer on the chase boat. We use that to track the sub by periodically writing out updated KML files and automatically refreshing them in Google Earth as network links. A submarine icon shows the current location of the sub, and a compass rose shows bearings to indicate which way to go to reach the next waypoint. Google Earth also provides lots of measurement tools, annotation tools, and other built-in functions that we can use to annotate and analyze the map. All of this information is saved to a shared filesystem so that everyone at the camp has access to all of the same map data.

We have established an operations role on the support vessels which we call the “Science Stenographer”. That person’s job is to listen in on the voice loop and transcribe any significant observations in real time. Observations worth calling up to the surface immediately appear on the map as icons that you can click on to read the date, time, lat/long, and what was said.

My reflection in the monitor showing the stenography program

My reflection in the monitor showing the stenography program

In addition, the submarines are recording video continuously. The video recorder also has an “event” button that can mark the timestamp of a significant event on the video. In post-processing, we cross-correlate the timestamps to get position, and put a preview image and compressed video clip into the map as well.

These maps have been very useful for operations, for post-flight analysis, and for planning the next set of activities. After the flights are over, the science back room immediately has the flight track as-flown and georeferenced notes from the pilots. After some video post-processing (which takes some time simply due to the quantity of data: over 25 GB of video from each flight) the video clips and video stills are georeferenced and in the map. This information has been used to modify or create flight plans in real time. As an example, one morning Margarita identified interesting sampling locations during her flight. The post-flight map was immediately used to create a second flight plan to send Ricky to those locations for sample collection that same afternoon. It has also been interesting to see all of the flights and notes and images on one map simultaneously. The team realized before the end of the field season that there were areas of the lake that had not been covered and could plan accordingly.

Georeferenced notes attached to the flight tracks in Google Earth

Georeferenced notes attached to the flight tracks in Google Earth

Without this real time information procesing and integration, it would have been too late to go back and investigate those areas during the field season. Those flight plans would have to wait for another year. In a field setting with a lot of logistics overhead and a short duration for field work, understanding the big picture of operations quickly is a big time saver.

Georeferenced tree image in Pavilion Lake

Georeferenced tree image in Pavilion Lake

After the field season is over, the map data will be used by the team to analyse and correlate information from across the lake and across different flights to support their research, and to plan next year’s activities. All of the observations and information gathered this year bring up new questions and new hypotheses, and there is always more to study in this lake.

The images in this post show a few different views of map screens. There is also a KMZ file that you can download and open in Google Earth to see one of our flight plans and watch the time lapse animated flight track for the actual submarine positions flight as it was flown that day. Try setting the playback speed to the minimum for best results. Enjoy!

- Matt

DOWNLOAD THE KMZ FILE


Tuesday, July 14th, 2009

What Did You Do On Your Summer Vacation?

by Bree and Jen

This is a question that we ask our students on the first day of school in September. Boy, we have some interesting things to share on our first day of school. This summer, we travelled together to the Pavilion Lake Research Project to learn about the science that is being done here and how it can be incorporated into the classroom. During the year Bree and I are both immersed in the classroom, and most of the time we are teaching science. Today we have found ourselves writing a blog which neither of us have done before. We seem to be entertaining the people around us with our different ideas of how best to compose one of these, and we will find out if we get a gold star later. The crew here have been very welcoming and happy to share about what they do here. In fact, our first night here we were allowed to get inside one of the DeepWorker submersibles which are used during the scientist flight missions (we were still on dry land, but still very cool). Part of us being here at Pavilion Lake was to integrate teachers into the different activities that go on here, and integrate us they did.

From left, Bree Riddell, Ricky Arnold and Jen Stonehouse

From left, Bree Riddell, Ricky Arnold and Jen Stonehouse

So we are sure you are wondering what we were were able to do at the lake. Unfortunately we were not allowed to drive the subs but we had many other cool opportunities to be part of the team. We sat in on science meetings, pilot meetings, classified data from the submersibles, talked to scientists and astronauts, observed the launches of the submersibles and helped record data from the flights as a science stenographer. One of things that we did was classify the images returned from the underwater flights. During the flights images of what the pilots see is recorded on camera. The pilots see very cool things when on their mission – microbialites. After the mission this data then has to be classified. We looked at images to identified what was in the image – microbialites, algae, rocks, sediment, trash – oh my! This is something that can easily be transferred to the classroom. We classify every day just like the scientists (just on a different level). As the team here classifies these images for science and further understanding, students can also classify these images in the process of learning how to do science. Trust us (or read the rest of these blogs if you don’t), microbialites are very interesting!

How did we do with our first blog? Did we get a gold star?

-Jen and Bree


Monday, July 13th, 2009

Thank you, Pavilion Lake Community!

by Ben Cowie
Community Day was a great success this year - with nearly 100 visitors from Pavilion Lake, the surrounding communities, and as far away as Kamloops

Community Day was a great success this year - with nearly 100 visitors from Pavilion Lake, the surrounding communities, and as far away as Kamloops

On Saturday evening, the PLRP opened its doors to the Pavilion Lake community! Roughly 100 people visited our community open house to learn about our project and how we study the lake they call home. We especially enjoyed the enthusiastic questions, the smiles and good wishes from everyone who attended the event.

Community members were invited into the Mobile Mission Command Center to check out our communications and lab equipment.

Community members were invited into the Mobile Mission Command Center to check out our communications and lab equipment.

We are very grateful for the support of the community at Pavilion Lake and the Ts’kw’aylaxw First Nation. Thank you all, from PLRP.

-Ben


Thursday, July 9th, 2009

At Home in the Herms

by Bekah Shepard

If you want to make a bunch of Pavilion scientists excited, just mention “the herms”. I just did my second submersible flight through the herms and it was spectacular! Let me give you a little background, so that you can understand why the flight was such a treat:

A bioherm is a mound constructed by biological organisms. A classic example is a patch reef: a decimeter to meter scale mound that is built by corals, sponges, and other reef animals. You may not think of a mound of organisms as being very sturdy, but just as your body is capable of making hard bones, other organisms such as corals also make hard skeletons. When those skeletons start to pile up, you get a bioherm – a biological mound!

So, what in the world does this have to do with microbialites. Remember that microbialites are “organosedimentary structures”, meaning they are built up of minerals that are influenced by organisms. “Whoa!” I hear you cry, “Does that mean that a microbialite is a bioherm? Well, a single microbialite is not usually defined as a bioherm, but if you pile up enough microbialites, you do end up with a mound that is constructed by organisms! By that definition there are some places in Pavilion Lake where we observe large piles of microbialites that can be defined of bioherms.

Thinking about microbialite bioherms is something that some of us geologists do quite frequently. Long before the organisms that build coral reefs evolved, big bioherms and reef structures still existed. Rather than being built by corals, sponges, or even shells, the ancient bioherms and reefs were built out of microbialites! Can you imagine SCUBA diving or piloting a submersible around ancient microbialite bioherms and reefs! Boy, I wish I had a time machine. Since I don’t have a time machine, I do the next best thing. Can you guess what that is? Yup, I come here and study the microbialites in Pavilion Lake. The details we learn about the microbialites in Pavilion Lake will help us to understand the fossil record of ancient microbialite reefs. That will help us to understand how life evolved on early Earth! Crazy cool stuff!

Ok, back to the Pavilion Lake herms. Here is where we are going to get really confusing! The “herms” are not actually bioherms, hence the lack of the “bio”. The herms are an area of sediment mounds at the southern end of the central basin of the lake. Now I know you are screaming, “but if they aren’t bioherms, which are so cool, why are you crazy scientists so excited about them!” It turns out that even though the herms are just sediment mounds, they are covered by some of the most interesting microbialites in the lake. There are a lot of different microbialite morphologies crammed into a very small space. If you start at the bottom of any given herm, you can often see several distinct morphotypes just by looking up two meters of slope. Likewise, if you move around a herm several meters, you often can see changes in morphotype or surface texture. Those are rapid changes! I’m sure you are asking yourself why the microbialites would be changing that rapidly, and that is one of our big research questions this year! It may be that the mounds are a place of significant environmental variability. In other words, there may be interesting water flow patterns, light conditions, variations in sedimentation, etc. that are unique to the herms. Any of these variables may be influencing the morphology of the microbialites! In short, the herms are a really complicated place, and if you haven’t figured it out yet, the scientists as Pavilion Lake love to study really complicated and interested places!

-Bekah


Thursday, July 9th, 2009

A New Canadian Astronaut Visits Pavilion Lake

by Jeremy Hansen

This year at Pavilion Lake, I have been introduced to fascinating microbialite structures, seemingly created by simple life forms over thousands of years.  The rare occasion to witness these, during a scuba dive, with my own eyes was a privilege.  I have also been impressed by the quality, professionalism and motivation of the individuals dedicated to the Pavilion Lake Research Project as they search for knowledge that answers questions about the beginning of life on earth.  This challenging and fundamental science can lead to discoveries we haven’t even contemplated.

The Pavilion Lake Research Project is demonstrating the incredible advancement of science possible when great minds share a common goal and it is providing an elegant example of the combination of field science and challenging operations that will be required in our continued quest for knowledge on the Moon, Mars and beyond.

- Jeremy

Jeremy (right) with Dave Williams (left) on the deck overlooking Pavilion Lake

Jeremy (left) with Dave Williams (right) on the deck overlooking Pavilion Lake


Saturday, July 4th, 2009

Keeping you current: 2009 PLRP Field Updates

by Ben Cowie

I arrived at Pavilion Lake this afternoon, and it’s as beautiful a place as I remember. Coming to the lake is always a special time of year and it’s great to see everyone on the team that you’ve missed over the past year.

This blog entry is about how you can keep up to date with the activities of the PLRP during this year’s field season. Through this blog we will provide daily updates about our science activities (both DeepWorker-based and surface-based). These blogs will include photos, videos and maps generated from our dives, and will be our primary communication tool during the field season. Our public calendar is available on our website, and will include important announcements from the team. You can also follow us on Twitter and Facebook by clicking the “Follow Me” link on the right of this page.

If you are in the local area of Pavilion Lake, we will host our Annual Community Open House on Saturday July 11 at 7:00PM, all are welcome to attend. Here we provide a short presentation about the ongoing science activities and give you a chance to meet the science and exploration team.  For more info about community day, please email me (brcowie@ucalgary.ca) and I’ll try to get you the information you need!

I’m looking forward to a great science and exploration season at Pavilion Lake. Good luck to all the DeepWorker pilots for successful flights and great science returns!

~Ben

Pavilion Lake, BC

Pavilion Lake, BC


Wednesday, March 25th, 2009

One microbialite, Two microbialites, Bulbous microbialite, Pointy microbialite

by Margarita Marinova

Welcome to the Pavilion Lake microbialite garden! To the right you will find the cauliflowers, straight ahead are the cauliflowers with chimneys, to the left we see the artichokes, and off in the deep end you can find some corals!

Cauliflowers with chimney structures

Cauliflowers with chimney structures

We didn’t plant the microbialite garden, but the Pavilion Lake Research Project team is there to study it. Microbialites are carbonate structures that form in water with the help of microorganisms. Commonly we see carbonates as limestone, but in certain special cases – often when life is involved – the carbonate precipitates to form some very unique structures. These microbialites are interesting because they can help us understand the types of structures that microorganisms form and the biological signatures they leave behind. We can then use this information to study similar structures from over 2.5 billion years ago. Microbialites are present in a number of lakes around the world, but what makes Pavilion Lake so special is the remarkable diversity! Not only is the lake full of microbialites, but the structures range in size, morphology (shape), and depth!

Artichoke structure

Artichoke structure

This is where our garden analogy comes in. As we explored the lake, we saw that the great diversity of microbialites fell into four general morphological categories: cauliflower, chimney, artichoke, and coral. From the four locations around the lake that we had decided to study intensely at the start of the project, these morphology types seemed to correlate with depth. We found the bulbous structures in the shallows, with chimneys, artichokes, and coral-like structures at increasing depths.

The microbialite structures are complex, and truly require a team with diverse skills and interests to study them. For me, the influence of physical factors on where and how the microbialites grow is incredibly interesting! Some specific questions that we are asking are: does the type of observed structure correlate with amount of light at that location? Is the mineral composition of the microbialites different between structures? Does the depth or the type of material on the lake bottom determine what type of microbialite grows? Studying the effects of light and temperature tell us whether biology is involved, as photosynthesis and therefore rate of growth depend on these parameters. Conversely, a relationship between mineralogy and morphology could mean a more abiological and chemical control on the shapes of the microbialites. One way of answering these questions is by placing sensors on the lake bottom – near microbialite structures – and recording the environmental conditions that the microbialites feel throughout the year. To assess environmental conditions we must collect years of data to be confident in the trends: for example, just because one year is cloudy and cold doesn’t mean this is always the case!

Cauliflower structures

Cauliflower structures

Another important approach that was started last year has been the use of the Deepworker submersibles. With these submarines we have been able to take high definition video of everything that the pilot sees: truly exploring the lake bottom without the constraints of scuba diving. We have used the video collected by the subs to map the lake bottom, that meant looking at more than 70,000 images, but it was well worth it! The mapping allowed us to really understand the distribution of microbialites over the entire lake and be able to more confidently say if morphology type correlates with factors like depth or lake bottom material. We certainly were in for some surprises when it came to the distribution of morphologies! For example we found that artichoke structures are distributed over a much larger range of depths than we had previously thought, and this coming summer we will be testing the hypothesis that the microbialites need a hard surface, like a rock, to start growing.

Coral-like structures in the deep end

Coral-like structures in the deep end

There is a lot more work to be done in understanding these microbialite structures. Pavilion Lake keeps us coming back with its fascinating science questions and enchanting structures: the depths of the lake are a window to the past, yet rooted in the present. Year after year we use these structures as a key to understanding the oldest life, the smallest organisms, and the most wondrous lake in beautiful British Columbia. What’s not to love?

:-) Mars