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Exploring the Herms: Bekah Shepard

Posted on July 6th, 2010 by Bekah Shepard

Magical! Driving a sub through the “herms” of Pavilion Lake is absolutely magical! Imagine this: a snow of particulates streaks around the dome. A yellow light permeates the water column as it filters through the planktonic cloud and bounces through the Chara. Microbialites rise up from the bottom like castles shrouded in a mist of microalgae. The natural world is like poetry to an observational scientist, and a dive in the herms is high art. Of course, to someone who studies the shapes and forms of microbialites (like I do), a dive in the herms is also like candy! Microbialites cover up to 90 percent of the lake bottom, and exhibit a variety of different shapes in a space of only a few meters. For a microbialite scientist – Yum!

View from the pilot's seat.

Today I was lucky enough to pilot such a dive to the herms. The herms are an area near the center of Pavilion Lake. Their name is a bit of a misnomer – in fact, it is more of a nickname that stuck! Herms is short for bioherms, which refers to a build up of biological organisms, usually into a mound that rises above the surrounding sea or lake floor. Our Pavilion herms are mounds, but they are probably just sediment mounds that are covered in lots of microbialites, rather than being mounds build up exclusively by microbialites. Nevertheless, they remain a favorite area of the PLRP scientific team, because of the small area, dense ecology, and interesting geochemical and limnological environment.

My mission was to completely circumnavigate two of the herms that we had not mapped in previous years. Navigating the subs through an area of such dense mounds and interesting features has been challenging in the past. The topography can make communication between the surface and subs problematic, and our maps have not always been as accurate as they are now. However, as our research has continued, our knowledge of the area has improved, our communications infrastructure has grown by leaps and bounds, and I daresay, some of us are even getting better at flying these subs! I am proud to say that the circumnavigation went smoothly and we were able to fill in some missing areas in our maps of the herms!

Exploring the herms at 40 feet.

Improving our maps also means raising more questions; such is the nature of exploration, and this dive was no exception. Although many of the morphological trends that I observed were similar to those I have noticed before (adding strength to some of our hypotheses), new subtleties leapt into view. Why, for example, do many of the microbialites along the bottom of the mounds look roughed-up, slightly broken, whitish, and all together kind of crummy? Does it have to do with fluctuating sediment levels at the bases of the mounds? Perhaps. That leads me to questions of how precisely sediment is transported around the mounds: what is the source of the sediment? How often do large sediment flows come down from the surrounding walls? Are the microbialites buried and exposed regularly or does it happen on a timescale of decades or centuries!? For each answer there are new questions, and for each new question there are a handful of associated questions.

Returning to the surface to see a smiling Susan Winnitoy, guiding me back to the barge.

The abundance of new questions is thrilling, and is what keeps bringing us back here. I often find myself chatting with people who are surprised that we haven’t uncovered all of the details of microbialite formation, development, and growth – after all, we have been studying Pavilion Lake for a number of years. Yet that is the appeal of studying microbialites! Microbialite mounds are subject to nearly countless variables – biological, chemical, and physical processes that change through time. Untangling each of those influences is a process – a process that is being helped along by the phenomenal amount of data that we are collecting with the DeepWorker subs, with the GAVIA AUVs, and with our team of SCUBA divers. So, do we understand everything about microbialite formation yet? Nope. Not by far. But with dives like my magical one through the herms, we are getting ever closer! The microbialites of Pavilion Lake have a story to tell, and through our exploration we are listening to the telling.

- Bekah

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Bekah looks at the highway-side of Pavilion Lake

Posted on July 2nd, 2010 by Ben Cowie

Bekah Shepard explores the highway side of the North Basin of Pavilion Lake. Click the wrench icon in the Google Earth plugin window to slow down the animation speed.

Download the KMZ file for your Google Earth software here: 20100629C

First flights of 2010 – Alex and Mars get underwater

Posted on June 29th, 2010 by Ben Cowie

I had the pleasure of being on board for the first launch of the 2010 field season. For this post, I’m going to let the photos speak for themselves.  You can view the rest of the photos from the day on Picasa here.

Enjoy, - Ben

Meet Allyson: Acting Principal Investigator for 2010

Posted on June 9th, 2010 by Allyson Brady

As the 2010 PLRP field season draws nearer, we are all busy with plans and preparations. This summer will be a bit different for me as our fearless leader Darlene will be on maternity leave and I will be stepping into the role of acting Principal Investigator (PI). A daunting task, but I know I have the support of an amazing team of people and we’re all working towards having a fun, safe and successful field season.

Allyson in final preparation for a DeepWorker flight

Looking back over the last 5 years that I have been involved in PLRP I am in awe of what we’ve accomplished and how much we’ve grown. Last year we successfully mapped additional regions of the lake using the DeepWorker submersibles and re-visited areas of interest identified in 2008 for more detailed imaging and observations. We were also very successful in classifying a great deal of our DW imaging data while in the field. This was a huge accomplishment and the entire team worked very hard to make this happen, we hope to have a repeat this year. Examination of the 2009 data has helped us to identify more regions that show interesting trends that we will be exploring in this upcoming field season.

Flight planning for 2010 is going ahead full-steam! We are very pleased to continue with our astronaut training program this year and welcome Chris Hadfield and the Stan Love to the PLRP gang. I can’t wait to see their reaction to viewing this remarkable lake and the microbialites for the first time.

As always, there are a number of fundamental science questions that we are working towards answering through the exploration of this beautiful lake, not only with DW but with SCUBA and GAVIA as well. We will continue to examine questions regarding the role of biology and physical parameters in carbonate precipitation including: What are the dominant surface microbial and viral communities? Does grazing by macroorganisms affect microbialite morphology? What is the role of algae? How do depth and slope affect morphology? And many more… I’m looking forward to partaking in some great science and exploration activities this summer.

The field season is nearly upon us so stay tuned for more updates!

~ Allyson

Margarita Marinova – July 10, 2009 (20090710A)

Posted on June 3rd, 2010 by Ben Cowie

This is a preview of what’s coming for 2010 – Google Earth mapping from the field! This Google Earth animation shows Margarita Marinova flying DeepWorker 6 in the South Basin of Pavilion Lake. If the animation moves too quickly, adjust the animation setting by clicking on the ‘wrench’ icon in the Google Earth Box.

Dr. Love’s Underwater Blog – Submarine Training: Day 3

Posted on April 6th, 2010 by Stanley Love

This morning the towers of downtown Vancouver, across Burrard Inlet from our hotel, were blurred with a grey veil of rain. No trouble, I thought. It rained yesterday and we got plenty of training done regardless. Rain is not really a threat to a submarine! But, crucially, the big rotating sign in the shape of a “Q” that marked the Lonsdale Quay marketplace was behaving oddly. Every once in a while its steady turning would stall, or even reverse for a few seconds.

The magnitude of the problem didn’t become apparent until we got out to the marine lab. The Canadian flag at the front of the building snapped madly and strained at its line. The sea was dark grey and spangled with whitecaps. Two-foot seas washed over the float where the support skiff was moored and interfered with each other near shore to make a high, sharp, chaotic chop. Sailboats in ones and twos, aborting cruise plans for the Easter weekend, struggled in the direction of the harbor under bare poles, pitching and plunging. Not a pretty day for nautical endeavors. (We found out later that it was the strongest windstorm in several years, with winds reaching 100 km/h. It dropped trees on power lines, cutting electricity to over 100,000 customers, and forced cancellation of some ferry service).

Our instructors didn’t like the look of things either. “Do you get seasick easily?” one of them asked me. Jeff was frowning at the idea of putting a sub under tow in the present sea state, if it should have a mechanical problem. For about an hour we stood around in our full raingear, watching the weather for signs of improvement. Our patience was not rewarded. If anything, it seemed to be getting worse–visibility dropping, sleet beginning to mix in with the rain. We began discussing how much submarine training we might be able to accomplish without having to court nausea and disaster by putting the vehicles in the water.

What we settled on was to call our sonar and manipulator work of the previous day sufficient and to devote our time today to the one system on the sub that we hadn’t touched yet: the video camera and recorder. It emerged that the video system works pretty much the same on land and in the water. Chris and I took turns sitting in DeepWorker #7, hatch closed to keep the rain out of the cockpit but resting securely on dry land, and working through the video controls. This was quickly done. Then we headed for the warmth and dryness of the lab for coffee and “Timbits” (evidently the Canadian word for donut holes). We had a relaxed discussion of all we’d learned. After that we exchanged a final round of thank-yous and handshakes, called our submarine driver certification complete, and parted company.

Thus ends Dr. Love’s underwater blog for now. It was a wonderful treat to drive the Deep Worker, and a much appreciated privilege to be allowed to do so, especially in the company of such excellent teachers and fellow students. For me this training trip was also a satisfying visit to the Pacific Coast. I was raised in Western Oregon, and any day when I get to see clouds caught in tall trees is a good one! The blog will resume this summer in a higher and less rainy environment, when I meet the DeepWorker submersible again for the Real Deal: the field season at Pavilion Lake.

-Stan

Soyuz Blasts Off in Kazakhstan – DeepWorker Dives in Vancouver

Posted on April 2nd, 2010 by Ben Cowie

Today was an exciting day in the world of space exploration! Here in Vancouver, it was day two of DeepWorker training with Chris and Stan, who searched through the murky waters of Burrard Inlet for sonar targets – but – halfway around the world, in Kazakhstan, the Russian space capsule Soyuz was preparing to blast off for the International Space Station with three astro/cosmonauts aboard! You can guess which event was more exciting to watch…

Soyuz blasts off in Kazakhstan (as viewed from the surface) - Photo: Scott Andrews/NASA

Deepworker in Action (as viewed from the surface) - Photo: Ben Cowie

After dinner in West Vancouver, we gathered around Chris’ laptop in the hotel to watch the Soyuz launch on NASA TV. American astronaut Tracy Caldwell Dyson (who is Chris’ neighbor in Houston!), was aboard with two Russian cosmonauts: Alexander Skvortsov and Mikhail Kornienko. Watching a human spaceflight with astronauts provides a very unique perspective about the procedures, nuances and stresses experienced during the flight. They could almost predict to the second when the booster rockets were to detach, when camera angles would switch, and when various communications with Moscow would occur – including a conversation with the Roscosmos presdient! Chris was also quick to point out the toy duck hanging above the pilot’s position that belongs to Alexander’s daughter. The duck acts as a gravity sensor, indicating when the vehicle has left Earth’s gravitational pull by floating away on its tether!

Tomorrow, Stan and Chris will become fully-certified as DeepWorker pilots, and I will depart from Vancouver. But, I will be back soon – the field season countdown clock is T-minus 122,942 minutes and counting!

- Ben

When it’s Pouring, the Best Place to be is Underwater

Posted on April 1st, 2010 by Chris Hadfield

April Fool’s Day in Vancouver, and the gray-black sky opened up. One of those cold pounding rains that makes you run in a crouch, hustling for cover. An umbrella-stealing rain. A rain that normally I wouldn’t go out in. But today I was splashing around and loving it, inches from the wet yet bizarrely dry, happily learning to pilot a DeepWorker one-person submarine.

Stan (the other student sub pilot) and I got to the West Van docks around 9 AM. Mike and the 2 Jeffs from Nuytco already had the subs ready, sleek and black with hatches open.

We had a classroom session on emergency procedures, what to do in case of fire, water leak, air leak, etc. We had sandwiches while Jeff told stories of using the subs to retrieve wrecks and bodies. We put on an extra layer of socks against the chill, climbed into our DeepWorkers feeling like race car drivers, and helped close the hatches. Kyle the crane operator smoothly lifted me first, up and clear, over and down the long pilings of the pier, into the cold green water of Burrard Inlet. Jeff in a dry suit unhooked me, carefully keeping his hands warm out of the water, and finally I got to the real work of the day – emergency drills, and sonar practice.

Before you submerge, the subs float where you see half sky and half sea. Today that was gray over green, and a little choppy, making the sub roll. As I sit and type this tonight I can still feel the slow roll of the sub in the water.

Gray over Green, from the surface of Burrard Inlet - Photo: Chris Hadfield

I confirmed by the little white radio microphone draped across my neck that my sub (‘DeepWorker 6’) was healthy, and got permission from Mike to dive. A reach down to the right to let water into the flotation tank, a sudden rush of white bubbles up the right side of the canopy, and magically I was back in another world. Somehow like slipping into oblivion.

Slipping into the green oblivion - Photo: Chris Hadfield

Burrard Inlet is a bad place to dive, with bits of stuff floating in the water, terrible visibility, and the bottom mostly gravel, rock, muck and the occasional pop can. I stared intently into the thick green fog, straining to see anything, but most of the time I barely saw the cloud of mud billow up just as I bumped into the bottom.

The main noise was from the 4 little propellers that moved me around. I steered with my feet, and the harder I pushed, the louder the noise and the faster I turned and went. I had to let up on the gas to hear Mike on the radio, as we went through the emergency drills. It was all pretty common sense stuff – if something’s leaking shut it off, if the air is bad use a mask, if water’s getting in head for the surface. Everybody was happy, and we got on to sonar work.

It was weird to pull the computer tablet out into my lap and have the Windows home screen there with me underwater. A few switch throws and the sonar display came up, replacing the green hill/blue sky with a multi-coloured radar scope. Mike and the Jeffs put targets into the water, and off I went, on a hunt.

Sonar display in DeepWorker: so near, and yet, so far - Photo: Chris Hadfield

I’m a poor sonar operator. Mostly the display looked to me like psychedelic ink blots. Jeff radioed me headings and distances, and once in a while I imagined I saw something on the sonar screen that matched. I tried driving fast to avoid drift, I tried slow and careful on heading, I tried up high near the surface, and I tried down by the bottom. Mostly I just drove where Jeff told me, and 3 times I found the sonar target suddenly looming out of the murk. I also found a piece of PVC pipe that I decided to pick up with the robot arm, clumsy on my first try with that. It uses a joy stick in my right hand, tipping and rolling it to move the arm joints, pulling the trigger to open and close the jaws. I got the pipe clamped on my 2nd try, and raised it high like a skinny algae-covered Olympic torch for the rest of the dive.

PVC Pipe, just like the Olympic Torch - Photo: Chris Hadfield

Jeff called and said it was 4:30, time to head back. I decided my prize PVC pipe would smell bad above water and let it go, and then pushed hard on my left heel to climb to the surface. As I broke into daylight I pulled a lever to fill the buoyancy tank with air, and then trundled over on the surface to where Jeff floated with the lifting hook. Kyle hauled me out and set my on the deck, still wet with rain. I did the last of the checks with Mike on the radio, opened the hatch, took off my warm socks, and climbed back out into the other, non-sub-piloting world.

When it’s April Fool’s Day and pouring rain, I recommend being underwater.

- Chris

Dr. Love’s Underwater Blog

Posted on March 31st, 2010 by Stanley Love

About a year ago, I heard about the Pavilion Lake Research Project, which investigates weird microbial growths in a lake in British Columbia. It sounded like a lot of fun, but I wasn’t sure how to get involved. Then, about ten days ago, I got a call from someone who saw that I’d volunteered for the Desert RATS expedition later this year. He wondered whether I’d also be interested in “something even cooler than NEEMO, if not quite as cool as space flight.” I said, “Is it as cool as Pavilion Lake?”

Turned out it was Pavilion Lake. Hooray! So I threw a bunch of wool socks, fleece shirts, and Gore-Tex into a suitcase (I lived in Seattle for six years, and have some idea of what kind of weather to expect up here in March) and flew on up to Vancouver for a very quick introduction to the “whos” and “whats” of Pavilion Lake.

For me, the most important of the “whats” will be the DeepWorker submersible, the miniature submarine that I’ll be piloting to explore the lake this summer. The DeepWorker was developed by Nuytco, the same company that built the famous “Newt Suit” diving apparatus. DeepWorker is just big enough to hold one pilot, some ancillary electronics, and some life support and survival gear. Attached to the outside are four thrusters controlled by foot pedals inside, the batteries that power the whole craft, and the compressed-gas tanks. There’s also a small hydraulic manipulator that looks like a miniature version of the robot arms we use on the Space Shuttle and Space Station.

Today was the first day of DeepWorker school. The students are myself and Canadian astronaut Chris Hadfield. He has had some past exposure to submarines, but I know nothing about them, so this is all new to me! But no matter. After a quick but thorough briefing by Jeff Heaton, I climbed into DeepWorker #7. Jeff ran me through some system checks and we lowered the clear bubble hatch. The crane picked me up, swung me out over the water, and lowered me into it, all in not much more time that it takes to write it all down.

It’s strange to sit, totally secure and dry, bobbing in the sea with the waterline right at eye level. Strange, but not at all uncomfortable. The sub moved only sightly in the small waves we had with today’s fair weather. Once I’d had a chance to get used to the feeling of being in the water, Jeff talked me through some basic surface maneuvers, using the foot pedals to control the thrusters. Turn right and left, move forward and backward, follow a compass heading. All that went fine. Then it was time to flood the ballast tank and start working underwater. No problem: I moved the valve, a lot of bubbles came up from the right side of the sub as the tank filled, and the waterline crept up the clear dome and then closed over my head. I had wondered ahead of time how that would feel, and was pleasantly surprised that the sense of overwhelming coolness overrode any apprehension about being underwater.

One of the things I had looked forward to on this trip was seeing the undersea life of Puget Sound up close. Sadly, it was not to be–the water was very murky, making it hard to see anything beyond the snout of the sub. So I didn’t see much marine life–Nor, during later maneuvering, did I see one of the nearby dock pilings until after I’d felt a bump!

The first dive was short and sweet. If seemed as if only a few minutes had passed when Jeff asked me to resurface for lunch. We all enjoyed a nice meal in the sunshine (unusual for this place and season). Chris and I chatted a bit with some folks from the local and national media, then prepared for the next dive of the day.

The second sortie cemented the lessons of the first. It also added some basic sonar navigation work and exercised the automatic depth-holding function. All very cool. Again, the time seemed to fly by, and all too soon they were hoisting us out of the water.

In all, it was a great day. The sub is a marvel, the instruction was topnotch, and I can’t wait to do it again tomorrow!

-Stan

Tracking submarines on the go!

Posted on July 15th, 2009 by Matthew Deans

For the past 10 days we have been making real time maps of all of the sub operations at Pavilion Lake. To do this, we have written some software to generate KML files to load into Google Earth. The Intelligent Robotics Group at NASA Ames has a lot of experience with ground data systems for NASA missions like the MER rovers, robotic earth analog field tests like the Robotic Recon test in northern Arizona in June, disaster response applications, and the Gigapan camera system, we were able to put together a set of tools to support sub tracking and mapping using a lot of existing software. We call the collection of tools and processes the “Surface Data System.”

Pavilion Lake 2009 Data Map

Pavilion Lake 2009 Data Map

We started with importing overlays of the bedrock geology from British Columbia Geological Survey (BCGS), as well as sonar bathymetry and sonar backscatter maps that show depth of the lake and structure of the bottom. These provide context for flight planning and for setting expectations for what we will find during the flights. In real time during the submarine flights, we get sub position every 5 seconds from the navigation computer on the chase boat. We use that to track the sub by periodically writing out updated KML files and automatically refreshing them in Google Earth as network links. A submarine icon shows the current location of the sub, and a compass rose shows bearings to indicate which way to go to reach the next waypoint. Google Earth also provides lots of measurement tools, annotation tools, and other built-in functions that we can use to annotate and analyze the map. All of this information is saved to a shared filesystem so that everyone at the camp has access to all of the same map data.

We have established an operations role on the support vessels which we call the “Science Stenographer”. That person’s job is to listen in on the voice loop and transcribe any significant observations in real time. Observations worth calling up to the surface immediately appear on the map as icons that you can click on to read the date, time, lat/long, and what was said.

My reflection in the monitor showing the stenography program

My reflection in the monitor showing the stenography program

In addition, the submarines are recording video continuously. The video recorder also has an “event” button that can mark the timestamp of a significant event on the video. In post-processing, we cross-correlate the timestamps to get position, and put a preview image and compressed video clip into the map as well.

These maps have been very useful for operations, for post-flight analysis, and for planning the next set of activities. After the flights are over, the science back room immediately has the flight track as-flown and georeferenced notes from the pilots. After some video post-processing (which takes some time simply due to the quantity of data: over 25 GB of video from each flight) the video clips and video stills are georeferenced and in the map. This information has been used to modify or create flight plans in real time. As an example, one morning Margarita identified interesting sampling locations during her flight. The post-flight map was immediately used to create a second flight plan to send Ricky to those locations for sample collection that same afternoon. It has also been interesting to see all of the flights and notes and images on one map simultaneously. The team realized before the end of the field season that there were areas of the lake that had not been covered and could plan accordingly.

Georeferenced notes attached to the flight tracks in Google Earth

Georeferenced notes attached to the flight tracks in Google Earth

Without this real time information procesing and integration, it would have been too late to go back and investigate those areas during the field season. Those flight plans would have to wait for another year. In a field setting with a lot of logistics overhead and a short duration for field work, understanding the big picture of operations quickly is a big time saver.

Georeferenced tree image in Pavilion Lake

Georeferenced tree image in Pavilion Lake

After the field season is over, the map data will be used by the team to analyse and correlate information from across the lake and across different flights to support their research, and to plan next year’s activities. All of the observations and information gathered this year bring up new questions and new hypotheses, and there is always more to study in this lake.

The images in this post show a few different views of map screens. There is also a

KMZ file that you can download and open in Google Earth to see one of our flight plans and watch the time lapse animated flight track for the actual submarine positions flight as it was flown that day. Try setting the playback speed to the minimum for best results. Enjoy!

- Matt

DOWNLOAD THE KMZ FILE