Microbialites

Subscribe

Boy meets microbialite

Posted on June 30th, 2010 by Tyler Mackey

Today was my first research dive of the 2010 PLRP season, starting a project on microbialite morphology. I am a geology graduate student from UC-Davis and, while I’m not a true microbiologist, my thesis work is focused on the potential signatures that their communities can leave in the rock record.

Side view of the MOUS showing vertically oriented growth structures (note lasers are 10cm apart)

Growth processes in the Pavilion Lake microbialites may give insight into the significance of ancient microbial carbonates. I’m particularly excited to join the PLRP crew because of the wide range of microbialite morphologies that are present here. In the course of the next two weeks, I will be diving on one particularly large microbialite, affectionately dubbed the MOUS (microbialite of unusual size). The carbonate structure is apparently templating a boulder from a rockslide. While today was mostly an exploratory dive to photograph and survey the structure, I will mostly be investigating the relationship among light regime, microbialite morphology, and invertebrate grazers.

Above the MOUS with blocks of microbialite

Locating the MOUS underwater was our first task of the day. We dropped down near its recorded location and then followed the lake bottom down along a landmark rockslide until we reached 85 feet. From previous dive records, we knew that the top of the structure was at 87 feet, so we swam parallel to shore until we intersected it. The visibility in Pavilion Lake is great (particularly as I’ve done most of my training off of Northern CA) so it was pretty easy to spot.

Sediment deposit with surrounding growth on the top of the MOUS

While my dive buddy, Mike Delaney, worked putting in a temporary transect line to help us more reliably locate the structure (particularly during night dives), I photographed some of the major regions. Large blocks have spalled off the side of the structure throughout its growth, forming an incipient conglomerate of sorts at its base. I’d love to see this in the rock record!

Mike Delaney installing temporary transect line

One of the aspects of modern analogues that really fascinates me is time-averaging. What we see here on the surface of the lake is a geological instant, and over time the current growth surface will be incorporated into the microbialite subsurface. What would this look like? Outside of this project, one of my broader research questions is determining what sort of paeleoenvironmental record might be left in a microbialite, and how that signature is altered with preservation, or lack thereof.

I’m excited to learn more about the interactions between these microbialite structures and their surrounding environment as the field season progresses. There is always room for the unexpected in fieldwork, and I look forward to seeing what future dives will uncover in the lives of these microbial communities.

-Tyler

Editor’s note: Tyler’s boyish good looks have earned him the affectionate nickname “Boy” among the science team – resulting in the title of the blog entry.

Mosaicing Microbialite Roads

Posted on June 29th, 2010 by Alex Forrest

As I near the end of my doctoral studies, I reflect on how different my thesis is from what I actually started four years ago but at the same time how much things come full circle. My involvement began when I started using UBC-Gavia, an Autonomous Underwater Vehicle, to map the bottom of the lake. Unfortunately, as a result of the slope steepness in this lake, we found it very hard to accomplish and so the focus of my thesis is on water temperature and physical transport. That said, I’ve maintained a soft spot for image mosaicing.

Gavia, the Autonomous Underwater Vehicle (AUV)

Just recently, we have been working with people from the Center for Coastal and Ocean Mapping (CCOM) and the University of Delaware to mosaic not only the images we have been collecting but also those Deepworker images. The first, and easier dataset to work with, was the flat sections in the middle of the lake which has been of interest due to the microbialite mats that have been observed there. These are easier to process as don’t have roll and pitch errors that are introduced. Below is just a very small sample of what the final product that can be generated.

Microbialite Mosaic

Mosaic of images collected by UBC-Gavia of microbial mats from the central basin (length of image is about 10 m long).

In addition to running AUVs, I am also lucky enough to participate in PLRP by being a Deepworker pilot and I was able to have my first flight yesterday. After finishing my mission yesterday and completing all my objectives, I was told that I had a bit of extra time left over so I leaped at the opportunity at testing my new found mosaicing skills. As I was coming back to the barge, I passed by what people around here call ‘microbiliate roads’; long straight lines of microbialite that are aligned along the slope. Lining up the camera, I tried to film a long straight line up the slope. Although the mosaic still has some error resulting from vehicle pitch – you can see this in the image by the fact that it begins to ‘pinch’ out – but I was still pretty happy with the first attempt.

So now the next step is to refine the processing so that we can start using these images for our mission planning for both AUV and Deepworker flights. Part of doing this is to clean the images to remove the roll and pitch effects and then we can drape these images over the bathymetry data that we are collecting. This will allow us to start creating a georeferenced map of the photos.

- Alex